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Submitted SNP(ss) Details: ss8820668           
Submitter
HandleEGP_SNPS
Submitter SNP IDASNA1-002566
RefSNP(rs#)rs8177467
Submitted Batch IDASNA1-PDR90-053003
Submitted DateJun 05, 2003
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJun 5 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8820668|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGGGTGAGGG CGGCACCAGA ACAAGCAATC CTAGTTTGGT GAACCTTGGT GTTTTATGCC
 CAAGGCGAGA GTGAGGGTGG AAAGCGAGGG AGAGAGCACG TGATGAGACT GTCCCAGGCA
 GCTACAGGCA GGAGGTGTCC GTTGGACAGA TTATCCTGGA CAAGCAGACT GAACCATCCT
 GTGCTTACTA GGGAATGCAG GAGACCCCTT AGCTTATTAA GGAAGGGGGC ACGGAGTCAA
 GCTATGCTGG CTGGA
 Y
 CGCTGGGCCA TGCCACTGTG CCCAGCAAAA AAGAAGCAGG CACTAGGCCA GACAGACTCA
 GTCAGCTGAA CCTTACCTCT CTAGTCCACA TAGAGGGGTC AGGAGATAAA TCAGAGAGGG
 TTCCTTTGTA GGGACTGAGG CTCAATCCCA CCATAACCCA TACTCTCCTC TCAAGGCCCC
 TGCTGATTCG GGTCACCTGC TCCAGGGAAC CTACCACTCC CCTTGCAGAC CCAGGGAACA
 GAGCCCATCC CCTCA

  Submitted Frequency for ss8820668 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176C=0.96590900
T=0.03409100
0.066 +/-0.036ASNA1-PDR90-053003EGP_SNPS


  dbSNP summary of Genotypes for ss8820668 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90176176C=0.96590906
T=0.03409091C/C=0.94318181
C/T=0.04545455
T/T=0.01136364
Pr(chiSq=8.446,df=1)
=0.005		Genotype
Freq.
HapMap-YRI120120C=0.87500000
T=0.12500000C/C=0.78333336
C/T=0.18333334
T/T=0.03333334
Pr(chiSq=1.573,df=1)
=0.251		Genotype
Freq.

  Submitted individual genotype for ss8820668 back to top
There is no individual genotype data for ss8820668.

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