NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss96616625           
Submitter
HandleHUMANGENOME_JCVI
Submitter SNP ID1103645397468
RefSNP(rs#)rs2742309
Submitted Batch ID1.63
Submitted DateMar 27, 2008
Publication Cited17803354
First entry to dbSNPMar 27 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWGS-ASSEMBLY-ATAC-MAPPING
Ascertainment Samplesize2
PopulationJ. Craig Venter
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss96616625|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CAACCTCTGC CTCCATGGTT CAAGCGATTC TCCTACCTCA GCCTCCCAAA GCTGGCACTA
 CAGGAGCAGG CCACCATGTC CAGCTAATTT TTATATGTTT TGTAGAGACG GGGTTTCACC
 ACGTTGACCA GGATGATCTC AATCTCCTGA CCTCGTGATC TGCCCGCCTC GGCCTCCCAA
 AGTGCTGGGA TTACAGGTGT GAGCCACCAT GCCCTGCCCT CTTTCTTTTT GAGAGGAAGC
 CTCACTCTGT
 Y
 GACTAGGATG GAGTGCAGGT GTGCAATCTC TGCTCACTGC AACCTCCGCT TCCTGGGCTC
 AAGCGATTCT CCTCCCTCAG CCTCCCAAGT AGCTGGGACT ACATACAGTT GTGCGCCACG
 GCGCCCAGCT AATTTTTTTT TTTTTTTTTT TTTTGTATTT TTAGTAGAGA CGGGGGTTTC
 ACCATGTTGG CCAGGTTGGT CTCGAACTCA CTGAGCTCAA GTGATCCTCC TGCCTCGGCC
 TCCTAAAGTG

  Submitted Frequency for ss96616625 back to top
There is no frequency submission for ss96616625.


  dbSNP summary of Genotypes for ss96616625 back to top
No sufficient data to compute Hardy-weinberg probability for ss96616625.


  Submitted individual genotype for ss96616625 back to top
There is no individual genotype data for ss96616625.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement