NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss108366519           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_105386_chr1_83283778
RefSNP(rs#)rs17109623
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:142

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108366519|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 CCCTTACAAA ACCATTACAT CTTGTGAGAA ATCATTCACT ATCACAAGAA CAGTGTGGGG
 GAAACTGCCC CCATGATTCA GTTACCTCCA CCTGGTCCTG CTCTTGACAT GTGAGGATTA
 TGGGGATTAC AATTCAAAAT GAGATTTTGG GTGACACAGC CAAACCATAT CACTGTGCAT
 GGAACATTGG CCAGTGGAAT
 R
 TTAAGAAAAT GTACCTGGTG TTCAACAATA AGATAGTTTT CTTCAAGTGA GAAGTTTCCC
 CTCTTGTTTC TCTGTTGTTT GTGATGGAAA CACAATGGCA TCTAGGCTGG AAGTACTACA
 AGAAACATCC CAGTAGTAAG TGCCCAATTC CCTATATGTG CTGCACTTTA TAGGGTCAGA
 GGCTATAGAA TAATGAAAAT

  Submitted Frequency for ss108366519 back to top
There is no frequency submission for ss108366519.


  dbSNP summary of Genotypes for ss108366519 back to top
No sufficient data to compute Hardy-weinberg probability for ss108366519.


  Submitted individual genotype for ss108366519 back to top
There is no individual genotype data for ss108366519.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement