NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss109542859           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_1395566_chr5_155949667
RefSNP(rs#)rs157292
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:145

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss109542859|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 TGGAAAGCAC CCACTGTGTT TTAAACTACA AATTCCTGAA ATCTAAACAA GGACTGGTTA
 TTCACAATAA TGATTATAAT GATAAACATG GACCTCGTGA TTTGGTAACG TGTTGAGCAG
 CACAATCAAT GCCCACTCTG TAAGCAGTGA ACAGGGAGGC ATTATGCACC CCCACAGTGG
 AAGGGAAAAG GAATGTATGT
 R
 TGAATGGCAT TGTTATACTT ACAGACAGAA AATGCCATTT GTTTGGCTTC AGGGCTAAAA
 GTAAAGTATA CGGATGGACA TTTTGAGAAG CCAGTTACCC AAATGCCTCG AAACATTACT
 GTTATTGTGA ATAAAATATC TGGAACCCAC TAATAAGCCA TGGGGAAACA GGTACCTTTG
 TGACCATAGT CTTCACTCCT

  Submitted Frequency for ss109542859 back to top
There is no frequency submission for ss109542859.


  dbSNP summary of Genotypes for ss109542859 back to top
No sufficient data to compute Hardy-weinberg probability for ss109542859.


  Submitted individual genotype for ss109542859 back to top
There is no individual genotype data for ss109542859.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement