NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss1280212           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000804-327904
RefSNP(rs#)rs152882
Submitted Batch IDOVLP-000804-109
Submitted DateSep 02, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPSep 2 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC010275 SequenceAccession1:AC010275 SequenceVersion1:5 SequenceContigName1:Contig3 SequenceContigPosition1:11111 SequenceLocalName2:AC013744 SequenceAccession2:AC013744 SequenceVersion2:3 SequenceContigName2:Contig13 SequenceContigPosition2:11024 PolyBayesConfidence:91

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1280212|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 TGGTCTACAT ATACTTGTTT GGAATGAGCA TTTTTTAATG TAATTAAAAT GTGTAATCTT
 AAAAGCTTAT TTCCTTACAG CTTGATTCCT CACTTTTTTC
 Y
 TTCTCTTTAT TCATGATAAT CAGAAACAGT GCATGCCTTT CTGGACCTCA AAAGGACACT
 GTGAGTACTT CTCTATTAGT ATACTTTGGG GTGTTGTTTT

  Submitted Frequency for ss1280212 back to top
There is no frequency submission for ss1280212.


  dbSNP summary of Genotypes for ss1280212 back to top
No sufficient data to compute Hardy-weinberg probability for ss1280212.


  Submitted individual genotype for ss1280212 back to top
There is no individual genotype data for ss1280212.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement