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Submitted SNP(ss) Details: ss16359313           
Submitter
HandleEGP_SNPS
Submitter SNP IDWRN-025875
RefSNP(rs#)rs11574170
Submitted Batch IDWRN-PDR90-012104
Submitted DateJan 23, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 23 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16359313|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGAGTTTGTT CTATATGGAA AATTTGTTTG ATAAAAGTAT TCTTTAAAAT TTTTTGTTCC
 ATAAATTATC AGTATTTTCA GTTTCTGATT CATGCTTGGG ATAGTTGCTG CATATTGTTT
 AATTTTGTCA GAATTTATAT TGTTAAATAT CAAATACGAC AGACTACCCT CAAATCATAA
 GTAGTTAATG TAATTAACAT CCTGTTTCAT CATGAGACTC TTCAGTGTTA CATTAAAAAC
 TGCTACCTCC TGGGC
 Y
 GGGCGTGGTG GCTCATGCCT GTAATCCCAG CACTTTGGGA GGCTGAGGTG GGCGATCGGA
 TCACGAGGTC AGGAGATTGA GACCATCCTG GCTAACATGG TGAAACCCCG TCGCTACTAA
 AACATGCAAA AAATTAGCCG GGCTTGGTGG CGGGCGCCTG TAGTCCCAGC TACTCAGGAG
 GCTGAGGCAG GAGAATGGCA TGAACCCAGG AGGCAGATCT TGCAGAGAGC TGAGATCGTG
 CCACTGCACT CCAGC

  Submitted Frequency for ss16359313 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176C=0.99431801
T=0.00568200
0.011 +/-0.016WRN-PDR90-012104EGP_SNPS


  dbSNP summary of Genotypes for ss16359313 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176C=0.99431819
T=0.00568182C/C=0.98863637
C/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16359313 back to top
There is no individual genotype data for ss16359313.

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