NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss19397217           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuDD-200402.chr19.NT_011295.10_15711609
RefSNP(rs#)rs2606278
Submitted Batch IDCSHL-HuDD-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUDD-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuDD21b19000140860564.R -39 39

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19397217|allelePos=501|len=1001|taxid=9606|alleles='A/T'|mol=Genomic
 acctttcttt ggattgagca gtttggcaac agtgtttttc tagaatctaa gaagggatat
 tttgggatgc tttgaggctt ctggtgaata acgaaatatc ttcagataaa aactagaaag
 aagctttctg agaaactgct ttgtgatgag tgcattcttt tcatggaatt aaacctttct
 tttgattgac cagattggaa acattgtttt tgtagaatct gcaaaggaat atttgggagc
 tcttttaggt caatggtgaa aaaggaaata tcttcagata aaaagtagaa agaagctttc
 tcagaaactg ctttgagata agagcattct tcacccagag ttaaaccttt ctttgattga
 tcagtttggc aacagtgttt ttgtaaaatc tgagaaggga tatttggggg cactttcagg
 cctatggtga aaaacgaaat atctgcagat aaaaactgga aagaaacatt ctgtgaagct
 gctttgtgaa gtgtgcattc
 W
 tctcacagag ttaaaccttt cttttgattg agcagtgtgg aaacattgtt ttggtagaat
 ttgtgaaaag atatttcgga gcgcattgag gcttagggtg aaaaaggaaa tgtcttcaga
 taaaaactag aaagaagGTT tcttagaaag cactttgtga catgtgcatt cttctcacag
 tgttaatctt ttcttttgat tgagcagatt gaaaacactg tatttgaagt atctgtgaag
 agatatttgg gagcatattg aggcctatga tgaaaaagga aatatcttca gatacaaact
 agaaagaggc tttctcagaa acatttttgt gacgtgtgca ttcatctcac agagttaaac
 ctttctttta attgaggagt gtggaaatat ttttgtgttg aatatgagaa gagaaatttt
 ggagtgcttt taggcctatg gtgaaaaagg aaatatcttc aaatgcaaac tagaaagtag
 ctttctgaga aactgctttg

  Submitted Frequency for ss19397217 back to top
There is no frequency submission for ss19397217.


  dbSNP summary of Genotypes for ss19397217 back to top
No sufficient data to compute Hardy-weinberg probability for ss19397217.


  Submitted individual genotype for ss19397217 back to top
There is no individual genotype data for ss19397217.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement