Submitted SNP(ss) Details: ss23468784

Submitted SNP(ss) Details: ss23468784

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd2107040
RefSNP(rs#)	rs1771178
Submitted Batch ID	AFD_AFR_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000013.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	46
Population	AFD_AFR_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTGAAGGTGA AGGCTCATAG CTTTCTGCTC ACAATCCTCC AGGCCATGTG ACATCCACGC
 AGATGAGGGC ATTCAGCACC ATTTCCTT
 GCATTGAATA TT
 R
 AAGAATAGCT AA
 TCATTCCCTA AGATCATTTT GAAGGTAACA GCAATAATAA TGTCCTTGTG AATGTCATGT
 TATGCCCTGC ACTTCACACA CACTTTCT

Submitted Frequency for ss23468784

There is no frequency submission for ss23468784.

dbSNP summary of Genotypes for ss23468784

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_AFR_PANEL - NORTH AMERICA	44	44	A=0.75000000	G=0.25000000	A/A=0.59090906 A/G=0.31818181 G/G=0.09090909	Pr(chiSq=0.505,df=1) =0.479	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	A=0.85416669	G=0.14583333	A/A=0.70833331 A/G=0.29166666	Pr(chiSq=0.189,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss23468784

There is no individual genotype data for ss23468784.

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