Submitted SNP(ss) Details: ss24023108

Submitted SNP(ss) Details: ss24023108

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd2107071
RefSNP(rs#)	rs1572881
Submitted Batch ID	AFD_CHN_18-MAY-2004
Submitted Date	Aug 20, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000013.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_CHN_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGCCTGCAGT GACTGCCCTG GCCATGAGAA TGCCTCTTTC TTTGCGAAAC TTGAAGGGTA
 TTCCCTACAC TGGAGGGGAA AACCCAGC
 AGTGGTCAAC AC
 R
 ATTAACAAAC CT
 TTCAAGTCTC TTTGGATTTT TGTTTGTGTT TTGAAACAGG GCCTTGCTCT GTTGTCCAGG
 CTGGAATGCA GTGGTGCAAT CATAGCTC

Submitted Frequency for ss24023108

There is no frequency submission for ss24023108.

dbSNP summary of Genotypes for ss24023108

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	G=0.93750000	A=0.06250000	G/G=0.87500000 A/G=0.12500000	Pr(chiSq=0.013,df=1) =1.000	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.89130437	A=0.10869565	G/G=0.78260869 A/G=0.21739130	Pr(chiSq=0.070,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	G=0.64583331	A=0.35416666	A/G=0.45833334 G/G=0.41666666 A/A=0.12500000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24023108

There is no individual genotype data for ss24023108.

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