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Submitted SNP(ss) Details: ss24778448           
Submitter
HandleEGP_SNPS
Submitter SNP IDRFC1-071809
RefSNP(rs#)rs193430
Submitted Batch IDRFC1-PDR90-060304
Submitted DateJun 04, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJun 4 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize166
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24778448|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 AGTGTGGCGA TTCCTCAGGG ATCTAGAACT AGAAATACCA TTTGACCCAG CCATCCCATT
 ACTGGGTATA TACCCAAATG ACTATAAATC ATGCTGCTAT AAAGACACAT GCACATGTAT
 GTTTATTGCA GCATTATTCA CAATAGCAAA GACTTGGAAC CAACCCAAAT GTCCAACAAT
 GATAGACTGG ATTAAGAAAA TGTGGCACAT ATATACCATG GAATACTATG CAGCCATCAA
 AAATGATGAG TTCAT
 R
 TCCTTTGTAG GGACATGGAT GAAATTGGAA ATCATCATTC TCAGTAAACT ATTGCAAGAA
 CAAAAAACCA AACACCGCAT ATTCTCACTC ATAGGTGGGA ATTGAACAAT GAGATCACAT
 GGACACAGGA AGGGGAATAT CACACTCTGG GGACTGTGGT GGGGTGGGGG GAGGGGGGAG
 GGATAGCATT GGGAGATATA CCTAATGCTA GATGACGAGT TAGTGGGTGC AGCGCACCAG
 CATGGCACAT GTATA

  Submitted Frequency for ss24778448 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90166G=0.99397600
A=0.00602400
0.012 +/-0.017RFC1-PDR90-060304EGP_SNPS


  dbSNP summary of Genotypes for ss24778448 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90166166G=0.99397588
A=0.00602410G/G=0.98795182
A/G=0.01204819
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24778448 back to top
There is no individual genotype data for ss24778448.

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