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Submitted SNP(ss) Details: ss2982086           
Submitter
HandlePGA-UW-FHCRC
Submitter SNP IDPROCR-003600
RefSNP(rs#)rs2069946
Submitted Batch IDPROCR-AFRICAN-043001
Submitted DateMay 18, 2001
Publication Cited[1] SeattleSNPs. NHLBI Program for Genomic Applications
First entry to dbSNPMay 18 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodMETHOD-D
Ascertainment Samplesize48
PopulationPGA-AFRICAN-PANEL
Allele
Observed AlleleT/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2982086|allelePos=51|len=101|taxid=9606|alleles='T/C'|mol=Genomic
 AGGGGGTTAT GGcactggaa gattttaagt aggaaaagga catgatctCA
 Y
 CCCTGGGTCA GGTGGAGGTC GGAATAGAGA ACGGGGAGAT GAAGTAGAAA

  Submitted Frequency for ss2982086 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PGA-AFRICAN-PANEL48T=0.93750000
C=0.06250000
0.117 +/-0.086PROCR-AFRICAN-043001PGA-UW-FHCRC
PGA-EUROPEAN-PANEL46T=0.97826099
C=0.02173900
0.043 +/-0.058PROCR-EUROPEAN-043001PGA-UW-FHCRC


  dbSNP summary of Genotypes for ss2982086 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PGA-AFRICAN-PANEL4848T=0.93750000
C=0.06250000T/T=0.87500000
C/T=0.12500000
Pr(chiSq=0.013,df=1)
=1.000		Genotype
Freq.
PGA-EUROPEAN-PANEL4646T=0.97826087
C=0.02173913T/T=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss2982086 back to top
There is no individual genotype data for ss2982086.

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