Submitted SNP(ss) Details: ss3176059

Submitted SNP(ss) Details: ss3176059

Submitter
Handle	WICVAR
Submitter SNP ID	WI-18469
RefSNP(rs#)	rs1042522
Submitted Batch ID	06.26.01-n
Submitted Date	Jun 28, 2001
Publication Cited	N.D.
First entry to dbSNP	Jun 28 2001 12:00:00:000AM

Resource Links
GenBank Accession	NM_000546
Submitted Gene Name	TP53
Submitted Gene ID	7157
Submitted SNP Synonyms	G1623a1
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	cDNA
Method	MITOG-RT-SEQ
Ascertainment Samplesize	64
Population	MITOGPOP6

Allele
Observed Allele	G/C
Ancestral Allele
Allele Origin	G:Germline A:Germline C:Germline
SNP Class	SNV
CpG Code	c_g/!a

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y
PCR Confirmed	Y
In Expressed Sequence	Y

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TATGGAAACT ACTTCCTGAA AACAACGTTC TGTCCCCCTT GCCGTCCCAA GCAATGGATG
 ATTTGATGCT GTCCCCGGAC GATATTGAAC AATGGTTCAC TGAAGACCCA GGTCCAGATG
 AAGCTCCCAG AATGCCAGAG GCTGCTCCCC
 S
 CGTGGCCCCT GCACCAGCAG CTCCTACACC GGCGGCCCCT GCACCAGCCC CCTCCTGGCC
 CCTGTCATCT TCTGTCCCTT CCCAGAAAAC CTACCAGGGC AGCTACGGTT TCCGTCTGGG
 CTTCTTGCAT TCTGGGACAG CCAAGTCTGT

Submitted Frequency for ss3176059

There is no frequency submission for ss3176059.

dbSNP summary of Genotypes for ss3176059

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MITOGPOP6 - MULTI-NATIONAL	64	64	G=0.67187500	C=0.32812500	C/G=0.53125000 G/G=0.40625000 C/C=0.06250000	Pr(chiSq=1.343,df=1) =0.251	Genotype Freq.

Submitted individual genotype for ss3176059

There is no individual genotype data for ss3176059.

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