NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss341924351           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1021346
RefSNP(rs#)rs10907177
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4512
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924351|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 CTTCTCACAC CGGGACCCAA AAGCCACAGG ACAGGCCCTG CTCCCTCCCG GCCTCTGCCA
 GCCTGCTCTG GCCTGGGACA CTCCAGTCTC AGGCCCATCT CCACGGCTGG ATGCCGCCTG
 CCCTGTGCCC TCCCGTGGGG CAGGTGCTGG TCCGGGAGAT ACCTTTGTTT CTTCTGTAGC
 AGGCCCTGGG GAGTTTACTG GAGCGCTTGA GGTAGAAGAA CCCAGCTACG GAGAGGATGA
 GGCCGGAGCT
 R
 ATGAAGAACG TGCCCAGGAA GAGGGAGGCG GCCACGCGCG GAGCCCCTGC AAACAGACAC
 CGCTGAGCAG ACGGGCAGGA CGGTGGCCCT GGCTCCTCGC CTGGCCCCCG GTGCCCCCTG
 CACATGGCAG ATGCGCTGCT CTCTGAACAT GCCTGAGCCT CACGGGACCG GCTGTGGGTG
 CCGAGGGCTC TGCACATGGG CCTGGGTCAT CCCTGCAGGC TCAGCCATGC CTGGGCATCT
 GGCCGCGGGG

  Submitted Frequency for ss341924351 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006A/A=0.66169500
A/G=0.30232200
G/G=0.03598300
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924351 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45124512A=0.80274820
G=0.19725177A/A=0.64671987
A/G=0.31205675
G/G=0.04122340
Pr(chiSq=0.482,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss341924351 back to top
There is no individual genotype data for ss341924351.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement