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Submitted SNP(ss) Details: ss342168428           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr4-100512919
RefSNP(rs#)rs17599091
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4434
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginG:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342168428|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 AATTGTTGTA GGTGTTAGTA ATGAGGGATG GGTGTAATGG GGAAGCTGTT TGTAGACTGA
 AAGACAGTTT GCTATTTGAC TTGATTCAAT AATTTAAACG ATGATTACTT GTTATAAAGA
 TGGCTATTTA TTTATTTAGG TCTTGGGTGT CAGTTCAAAA GCTACATCTG TCACCACCTA
 TAAGATAGAA GACAGCTTTG TTATAGCTGT GCTTGCTGAA GAAACACACA ATTTTGGACT
 GAATTTCCTA
 S
 AAACCATTAA GGGGAAAATA GTATCGAAGT AAGATAATGC TAAAATTTTT ATTTTCTTTG
 CTATTCTTTG TTATATTATT ATACTTGATT TGTAAATAGA TCTGTGTTTG TGTGTGTGTG
 TGTGTGCGCG TGTAGTCATG CATTGCTTAA CAATGGGAAT AAGTTCTGAG AAAAGCATTG
 TTAGGCAATT TCATCACTGT GCAAACATCA TAGAGTATAC ATACACAAAC CTAGATGGCA
 TAGCCTACAC

  Submitted Frequency for ss342168428 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.92034400
C/G=0.07796400
G/G=0.00169200
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342168428 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		44344434C=0.95805144
G=0.04194858C/C=0.91790706
C/G=0.08028868
G/G=0.00180424
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342168428 back to top
There is no individual genotype data for ss342168428.

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