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Submitted SNP(ss) Details: ss342541144           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr22-35660875
RefSNP(rs#)rs1053593
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4552
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342541144|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 TCTTGATTAT TTCTAGATAT TTCGTCTTTG GAATCGTCAC AGAAGAAAAA GAAAAAGTCC
 AGCCCACAGT CTACTGATAC AGCTATGGAC CTGTTGAAAG CTATCACTTC CCCACTGGCA
 GCAGGCTCCA AGCCCTCCAA AAAGACTGGG GAGAAATCCT CTGGCTCTTC AAGCCATTCG
 GAGAGTAAAA AGGAGCACCA CAGGAAGAAA GTCAGTGGAA GCAGTGGGGA ACTACCCCTA
 GAGGATGGTG
 K
 CTCCCACAAA TCGAAAAAAA TGAAACCTCT CTATGTGAAC ACAGAGACAC TGACCCTTCG
 GGAGCCTGAT GGTTTAAAAA TGAAACTTAT TCTGTCACCA AAGGAGAAGG GAAGCAGCTC
 TGTTGATGAG GAGTCTTTTC AATATCCCTC CCAACAAGCG ACTGTGAAAA AATCCTCAAA
 GAAATCAGCT CGGGATGAGC AGGGTGCTTT ACTCCTAGGA CATGAGTTAC AGAGCTTTCT
 GAAAACAGCC

  Submitted Frequency for ss342541144 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006G/T=0.39289600
G/G=0.31416300
T/T=0.29294199
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342541144 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45524552G=0.54613358
T=0.45386642G/T=0.37697715
G/G=0.35764500
T/T=0.26537785
Pr(chiSq=130.630,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss342541144 back to top
There is no individual genotype data for ss342541144.

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