Submitted SNP(ss) Details: ss35038282

Submitted SNP(ss) Details: ss35038282

Submitter
Handle	EGP_SNPS
Submitter SNP ID	GPX5-003609
RefSNP(rs#)	rs28382596
Submitted Batch ID	GPX5-EGP_YORUB-022405
Submitted Date	Feb 25, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Feb 25 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY882013
Submitted Gene Name	GPX5
Submitted Gene ID	2880
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGTAAAAACC TGCATAGAAA AATATCTTTT TCCTCAAGAG TAAGAAGTGA GTAGCTACAA
 CCTAGTATGC TGGTGATAAA ATCAGTGGGA TAACAGGACT AGAAAAAAGT TGTGTTTTGT
 TTTGCTTTGT TTTGCATTAC TCCTTCTCTG AATGGGGGGC AGATGATGTT CAACCAAAAT
 CCTTACTAGA CTACTGCATT TCCAGGAAGT CTAGTTTAAT CCTAGTTTGT CTGGACATTC
 CTTATCAAAT AATGC
 Y
 CTTCTCTCTT TTCTCCAGCC AGTTCCTTTC CACCTTTTTC TCACCGGATG GTTTGGACAT
 AGAGCTTCCT TTTCATATTC CTGTCATATA TATTCTGTAT TCCATGAGCA ATTTGTGGCA
 GCTTCCCCAG TATAAGAAAA GGGATCAGCA TGTGCTGGTG AGCACTGTGG CATCGGTACA
 CTTGGGGTAC TGCATGAACA CTGTAAGGGT AGAGACAGAG GAGGAGTAAG ATGAGACCTG
 CCTTGTAGAG GAATT

Submitted Frequency for ss35038282

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_ASIAN-PANEL	42	C=1.00000000	T=0.00000000	GPX5-EGP_ASIAN-022405	EGP_SNPS
EGP_YORUB-PANEL	24	C=0.91666698	T=0.08333300	GPX5-EGP_YORUB-022405	EGP_SNPS
EGP_HISP-PANEL	36	C=1.00000000	T=0.00000000	GPX5-EGP_HISP-022405	EGP_SNPS
EGP_AD-PANEL	28	C=0.96428603	T=0.03571400	GPX5-EGP_AD-022405	EGP_SNPS
EGP_CEPH-PANEL	36	C=1.00000000	T=0.00000000	GPX5-EGP_CEPH-022405	EGP_SNPS

dbSNP summary of Genotypes for ss35038282

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.91666669	T=0.08333334	C/C=0.83333331 C/T=0.16666667	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	28	28	C=0.96428573	T=0.03571429	C/C=0.92857140 C/T=0.07142857	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss35038282

There is no individual genotype data for ss35038282.

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