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Submitted SNP(ss) Details: ss42570536           
Submitter
HandleABI
Submitter SNP IDhCV1401591
RefSNP(rs#)rs2331823
Submitted Batch IDxplore_hum_chr5_2
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 2
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss42570536|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 AATTAGGAAA CTCTATATTT TATGGGGGAA GAGCACCAAA ATAACTTCAG TAATTATAAA
 ATTGTAGCTT CCTGAAAATT TAGTGAGTTG TTGGCTATGG AGCTACCTGG ACTGGTACAT
 TTAAATGTAC ATTTTTAATT ACTTTTTCTT TGGTCAATTC TGTACTTATA GATCTATTAA
 ACTTGTATGG TTTTCTTGAG TCAATTTAAA TTTTGACAGA GATTCAGCTA TTTCCTCTGG
 ATTTTAAAAA TTGTTATGGA TAATTTTTAA TATTTTCCAT ATCTATGATT ATATCTGTTT
 Y
 CTTGCTTCAA AATATTTTTG GAGGGGTCAT ATTTTATAAA TCTCTACATT TTGTTTTCAA
 TTTTACTGAT TTCATATTTT ATCTCTATTA CGCTTTTCTT ACTCCATTTT TATATTGCTT
 TATTTTTCTA GTTTAAGGTG ACAACAAATC CAGTTTTTTG TTTGTTTGAT TAGTAAAAAA
 TATTCTTATG ACTCTACCTT TTTACCTTTG AGTAGAGCTT TAATTTTCTC TTTTTGGACC
 AAGGTGCTTG TTTTTACTGA AGAAGAAAGA CAATAATTGT GGATGATCTT AATTTGAATA

  Submitted Frequency for ss42570536 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AoD_Caucasian
NORTH AMERICA
92T=0.66000003
C=0.34000000
xplore_hum_chr5_1ABI
AoD_African_American
NORTH AMERICA
90T=0.88000000
C=0.12000000
xplore_hum_chr5_1ABI


  dbSNP summary of Genotypes for ss42570536 back to top
No sufficient data to compute Hardy-weinberg probability for ss42570536.


  Submitted individual genotype for ss42570536 back to top
There is no individual genotype data for ss42570536.

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