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Submitted SNP(ss) Details: ss43536472           
Submitter
HandleABI
Submitter SNP IDhCV336295
RefSNP(rs#)rs12557182
Submitted Batch IDxplore_hum_chrX_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43536472|allelePos=301|len=601|taxid=9606|alleles='A/C'|mol=Genomic
 AGAGTCCCCA TTCCTGGAGT GGAAGAGCTA GAACTCAAAT CTGGCAGTCC AACTTCCTAG
 CTGTGAGACT TTGGGCAAGT TACCCTTGTT TAGAATTATA GTGCATATTT CTCCAATAGG
 TTCTTTGAAA GCATATAAAC CCTTCAGAGC TAAAAGAAAT TTGCCAAACA AGTTAGATAC
 CAATTTACAA GTCTCCTTTT TAGTAAACAC AGCACCTAAA GGGAACCTTC CCAAGTTTTA
 GCTTTATGTT TACTTTCATC ATATTAAATT CTGGACTCTT GTCCTCAAAC TCATGAATTT
 M
 GAATGATGTT GAGCAAAAGG TCTTTTTAAA ATACAGGACA CAGAGGCATA CGGTACCTAT
 TTATCTTTGT TTTCTATTCA GAGTGATGGT TTTCCTACAA GTTTAAGTCA GATTAACTGT
 TTCTCCTTTA TAATTCCTAA TAATAGGTAC ACTCATTGCA TTCAGTTACT TTATACCCTT
 GCTTTTGGTA AGTTTCTTAA AGGAGAAAAG CAATATGATT TTAAAGTAAG AATGTTGAAC
 ACATGAAAAA GAGTATTAAA AGTTAATAAA AATATGTTTT TAAGCTATAA AATGACTTAA

  Submitted Frequency for ss43536472 back to top
There is no frequency submission for ss43536472.


  dbSNP summary of Genotypes for ss43536472 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		9090A=0.96666664
C=0.03333334A/A=0.95555556
C/C=0.02222222
A/C=0.02222222
Pr(chiSq=19.316,df=1)
=0.001		Genotype
Freq.
HapMap-JPT8888A=0.97727275
C=0.02272727A/A=0.97727275
C/C=0.02272727
Pr(chiSq=42.045,df=1)
=0.001		Genotype
Freq.
HapMap-YRI120120A=0.97500002
C=0.02500000A/A=0.96666664
C/C=0.01666667
A/C=0.01666667
Pr(chiSq=25.987,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss43536472 back to top
There is no individual genotype data for ss43536472.

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