NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss5442523287           
Submitter
HandleHUGCELL_USP
Submitter SNP ID1_17654689_A_C
RefSNP(rs#)clustering in process
Submitted Batch IDWGS_SNVs_INDELs
Submitted DateOct 19, 2021
Publication Cited[1] Whole-genome sequencing of 1,171 elderly admixed individuals from the largest Latin American metropolis (Sao Paulo, Brazil).
First entry to dbSNPOct 19 2021 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWHOLEGENOMESEQUENCING
Ascertainment Samplesize2342
PopulationSABE_Brazil_WGS_1171
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5442523287|allelePos=26|len=51|taxid=9606|alleles='A/C'|mol=Genomic
 ACTGTCCCCT GCTGGGTTTC TCAGC
 M
 GTCAGCACCT CCCTTCCACA GGGCT

  Submitted Frequency for ss5442523287 back to top
There is no frequency submission for ss5442523287.


  dbSNP summary of Genotypes for ss5442523287 back to top
No sufficient data to compute Hardy-weinberg probability for ss5442523287.


  Submitted individual genotype for ss5442523287 back to top
There is no individual genotype data for ss5442523287.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement