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Submitted SNP(ss) Details: ss6396354           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDNT_004321.13_305709
RefSNP(rs#)rs2742686
Submitted Batch ID11-FEB-2003
Submitted DateFeb 12, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 12 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWIBR_FOSMID_END_SNPS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P802860RC4.T0position:127quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss6396354|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GCCCTGGTGT GACCAGGAAG GTGGGAGGCC CCCGCGGCCA GGCCCTCTGC AGTCAGGTCC
 TGTGCAGTCA GGCCCTGTGT GGTCTTCCTT GAGGGGAAGT TTTCTGTTCC TTGGGTTCTG
 CAGGAGCAGG CAGGAGGCCC TGTGGGTCCA GGAGGGCGCC TCGGGGTCTG CCTGGCCAAT
 GTCAGAGGGG TAACGGCCCA
 Y
 CTGCAACTGG ACTCAGCTGT GGCCACAGGA TGGGGACAGG AGAGTGGCCA CACGTAGGAA
 ACCCAGGGTG AGGGACCTCA GCCTGCAGGG TCTGGGGACC ATTCCCAAGG AGCCCCTGAG
 CTGGGCTGAA TGGTGTTCAG AGATGGGGTT CCGGGGAAAC CTCCCTCACC CCAGTCAGAG
 CTGAGGCTGG GGGTGCAGCT

  Submitted Frequency for ss6396354 back to top
There is no frequency submission for ss6396354.


  dbSNP summary of Genotypes for ss6396354 back to top
No sufficient data to compute Hardy-weinberg probability for ss6396354.


  Submitted individual genotype for ss6396354 back to top
There is no individual genotype data for ss6396354.

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