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Submitted SNP(ss) Details: ss66859656           
Submitter
HandleEGP_SNPS
Submitter SNP IDMMP20_000271
RefSNP(rs#)rs1940046
Submitted Batch IDMMP20-JPT-041206
Submitted DateNov 09, 2006
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPNov 9 2006 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-GENO-ILLUMINA
Ascertainment Samplesize24
PopulationJPT_GENO_PANEL
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss66859656|allelePos=101|len=201|taxid=9606|alleles='G/C'|mol=Genomic
 TGAAGATAAG GCTCTAGAAG ACAGGAGACC ATATAAATGC AAATTTTGAA AAATTATTGC
 AATRTCCTAT TCCTTTCCTG AAACCAAAAA GCAATGATTA
 S
 TATATGTTTG TACATTCATT CNTTCTTTTT TTTTAACAAA CTTGATTAAG TAACATTTTT
 TAGAATACAG TCTTCAAASA GCTTACAATT TAGTTGAATG

  Submitted Frequency for ss66859656 back to top
There is no frequency submission for ss66859656.


  dbSNP summary of Genotypes for ss66859656 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HSP_GENO_PANEL5252C=0.65384614
G=0.34615386C/C=0.46153846
C/G=0.38461539
G/G=0.15384616
Pr(chiSq=0.588,df=1)
=0.479
Genotype
Freq.
CEU_GENO_PANEL6868C=0.83823532
G=0.16176471C/C=0.70588237
C/G=0.26470590
G/G=0.02941176
Pr(chiSq=0.019,df=1)
=1.000
Genotype
Freq.
AAM_GENO_PANEL118118C=0.70338982
G=0.29661018C/C=0.47457626
C/G=0.45762712
G/G=0.06779661
Pr(chiSq=0.552,df=1)
=0.479
Genotype
Freq.
CHB_GENO_PANEL9090C=0.87777776
G=0.12222222C/C=0.80000001
C/G=0.15555556
G/G=0.04444445
Pr(chiSq=3.404,df=1)
=0.100
Genotype
Freq.
YRI_GENO_PANEL112112C=0.58928573
G=0.41071430C/G=0.42857143
C/C=0.37500000
G/G=0.19642857
Pr(chiSq=0.736,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss66859656 back to top
There is no individual genotype data for ss66859656.

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