Submitter Handle PERLEGEN Submitter SNP ID PGP06680048 RefSNP(rs#) rs3093948 Submitted Batch ID PGP_29-JAN-2007 Submitted Date Jan 30, 2007 Publication Cited N.D. First entry to dbSNP Jan 30 2007 12:00:00:000AM Resource Links GenBank Accession NC_000006.9 Submitted Gene Name N.D Submitted Gene ID N.D. Submitted SNP Synonyms N.D Submitted linkout N.D Assay Species Homo sapiens Molecular Type Genomic Method PERLEGEN-600K Ascertainment Samplesize 1 Population N.D. Allele Observed Allele G/A Ancestral Allele N.D. Allele Origin N/A SNP Class SNV CpG Code N.D. Validation Validation Status HWE Goodness of Fit not applicable Variation Frequency Submission N.D. Genotype Summary population count: 4 Genotype Submission N.D. Haplotype N.D.   Fasta sequence   (Legend) >gnl|dbSNP|ss68971650|allelePos=65|len=129|taxid=9606|alleles='G/A'|mol=Genomic TACAGGTTTA CAGGAAAGGT ATCAGTAAGT GGTGTTAAAA TACCAAATTC AGAGCAGCAG ATAC R CTTTTAAGGG ACAG GATCTCACCA TGTTGCCCAG GCTGGAGTGC AGTGGCTATT CACTGGCACA   Submitted Frequency for ss68971650 There is no frequency submission for ss68971650.   dbSNP summary of Genotypes for ss68971650 Population ID  -Class Total Sample (2N) Founder (2N) Major Allele Freq. Minor Allele Freq. Genotype Freq. HWE Goodness of Fit Data Source HapMap-HCB - EAST ASIA 90 90 G=0.97777778 A=0.02222222 G/G=0.95555556 A/G=0.04444445 Pr(chiSq=0.001,df=1) =1.000 Genotype Freq. HapMap-JPT 90 90 G=0.88888890 A=0.11111111 G/G=0.77777779 A/G=0.22222222 Pr(chiSq=0.148,df=1) =0.752 Genotype Freq. HapMap-CEU 120 120 G=0.74166667 A=0.25833333 G/G=0.56666666 A/G=0.34999999 A/A=0.08333334 Pr(chiSq=0.450,df=1) =0.527 Genotype Freq. HapMap-YRI 120 120 G=0.85833335 A=0.14166667 G/G=0.71666664 A/G=0.28333333 Pr(chiSq=0.430,df=1) =0.527 Genotype Freq.   Submitted individual genotype for ss68971650 There is no individual genotype data for ss68971650.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement