Submitted SNP(ss) Details: ss70437746

Submitted SNP(ss) Details: ss70437746

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PDLIM1-000407
RefSNP(rs#)	rs7099702
Submitted Batch ID	PDLIM1-EGP_CEPH-040607
Submitted Date	Apr 18, 2007
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Apr 18 2007 12:00:00:000AM

Resource Links
GenBank Accession	AY923052
Submitted Gene Name	PDLIM1
Submitted Gene ID	9124
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	40
Population	EGP_CEPH-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGCCTGGGTA CCAGGATGAA TGGGTGCCAA GAAAACTGCG AAGAAACTGG GCCCAGAGAG
 GGTAAGTGGT CCTGAGGATG GCCAATGTGT TATATACATT AAGTACTATG TGCCAGGCAC
 TATTCTAGGC ACTGGGGCAC AGCAGTGATC TAAACAGATA AAAACCCCTG TCCTTATGGA
 ATTAATGCTT AAGAGTGGGG GTGGAACAAA TAAATATACA AAATATAGAG AATGCCAGAT
 GGTGATACAT ACAAA
 R
 GAAAAAAATA AGGCAGGGGA AGGTAATAGA GCATTCTAGA GAGGATATCT TAAATGATGC
 TCAGAGATGA CCTCAGAAAA TGACATTTGC ATTTTTTTTA TTTTTTAGTT TTTGAGATAG
 GGTCTCACTC TGTCACCCAG GCTGGAGTAC AGTTGCACGA CCACAGCTCA CTGCAGCCTT
 GACCTCTCCG GCTCAAGCCA TCCTCCCACC TCAGTCTCCC TAGAAGCTGG GACAGGTGTG
 CCCCACCAAA CCTGG

Submitted Frequency for ss70437746

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	40	G=0.87500000	A=0.12500000	PDLIM1-EGP_CEPH-040607	EGP_SNPS
EGP_YORUB-PANEL	20	G=0.80000001	A=0.20000000	PDLIM1-EGP_YORUB-040607	EGP_SNPS
EGP_HISP-PANEL	38	G=0.94736803	A=0.05263200	PDLIM1-EGP_HISP-040607	EGP_SNPS
EGP_AD-PANEL	28	G=0.75000000	A=0.25000000	PDLIM1-EGP_AD-040607	EGP_SNPS
EGP_ASIAN-PANEL	48	G=1.00000000	A=0.00000000	PDLIM1-EGP_ASIAN-040607	EGP_SNPS

dbSNP summary of Genotypes for ss70437746

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	20	20	G=0.80000001	A=0.20000000	G/G=0.69999999 A/G=0.20000000 A/A=0.10000000	Pr(chiSq=1.406,df=1) =0.251	Genotype Freq.
EGP_HISP-PANEL	38	38	G=0.94736844	A=0.05263158	G/G=0.89473683 A/G=0.10526316	Pr(chiSq=0.006,df=1) =1.000	Genotype Freq.
EGP_CEPH-PANEL	40	40	G=0.87500000	A=0.12500000	G/G=0.75000000 A/G=0.25000000	Pr(chiSq=0.096,df=1) =1.000	Genotype Freq.
EGP_AD-PANEL	28	28	G=0.75000000	A=0.25000000	A/G=0.50000000 G/G=0.50000000	Pr(chiSq=0.681,df=1) =0.439	Genotype Freq.

Submitted individual genotype for ss70437746

There is no individual genotype data for ss70437746.

Disclaimer Privacy statement