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Submitted SNP(ss) Details: ss70457401           
Submitter
HandleEGP_SNPS
Submitter SNP IDTNFRSF25-003658
RefSNP(rs#)rs11800462
Submitted Batch IDTNFRSF25-PDR90-041007
Submitted DateApr 19, 2007
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPApr 19 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize152
PopulationPDR90-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss70457401|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TGTTCAGCAG TGGCCGACAC CCGCTGTGGC TGTAAGCCAG GCTGGTTTGT GGAGTGCCAG
 GTCAGCCAAT GTGTCAGCAG TTCACCCTTC TACTGCCAAC CATGCCTAGA CTGCGGGGCC
 CTGCACCGCC ACACACGGCT ACTCTGTGAG TACCCCCACC CAGGGCTCTC TACTCCCAGA
 CCCCCTTCTC CCTGCCTGAC CCACTCCTGT CCCATGGTGA CGCATGCCTC TCCTGGATTG
 CAGGTTCCCG CAGAG
 R
 TACTGACTGT GGGACCTGCC TGCCTGGCTT CTATGAACAT GGCGATGGCT GCGTGTCCTG
 CCCCACGTAA TTCCTAGCTG TCGTGGGATG GAGGGAAGGG CGGCTGGGAG CAGAGCAGGG
 GCCTGGGGTG GGGCAGGTGC TGCTGGTTCA GGAATAGGAA GAGGGGATAG GGAGGAGGGA
 GCCTTGGCCC TGTGATGGGT GGGCCCCACT TCAGGCAAAC TTAGATGGCA AAAGAGCAAT
 CTGGATCCGC CTTAG

  Submitted Frequency for ss70457401 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90-PANEL152A=0.90789503
G=0.09210500
TNFRSF25-PDR90-041007EGP_SNPS


  dbSNP summary of Genotypes for ss70457401 back to top
No sufficient data to compute Hardy-weinberg probability for ss70457401.


  Submitted individual genotype for ss70457401 back to top
There is no individual genotype data for ss70457401.

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