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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000621-2
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:3445
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss221376 OVLP-000621-2766 A/G 4 rs154469 1 16 58685243 NT_010498.16 12304561
ss221380 OVLP-000621-3378 A/G 4 rs154469 1 16 58685243 NT_010498.16 12304561
ss221372 OVLP-000621-2609 A/G 4 rs165947 1 16 84275418 NT_010498.16 37894736
ss221381 OVLP-000621-3670 A/G 4 rs154716 1 5 11232170 NT_006576.17 11222170
ss221371 OVLP-000621-2415 A/G 4 rs165946 0 5 35365480 NT_006576.17 35355480
ss221363 OVLP-000621-1768 A/G 4 rs165942 0 5 54150626 NT_034772.7 4040819
ss221362 OVLP-000621-1766 C/T 4 rs149542 1 5 54165866 NT_034772.7 4056059
ss221386 OVLP-000621-3912 C/T 4 rs154251 0 5 56531731 NT_034772.7 6421924
ss221367 OVLP-000621-1946 A/C 4 rs27917 0 5 58357810 NT_034772.7 8248003
ss221364 OVLP-000621-1899 C/T 4 rs27212 0 5 58359131 NT_034772.7 8249324
ss221365 OVLP-000621-1904 G/T 4 rs27724 1 5 58360429 NT_034772.7 8250622
ss221366 OVLP-000621-1905 A/C 4 rs27937 0 5 58361135 NT_034772.7 8251328
ss221360 OVLP-000621-1423 A/T 4 rs165940 0 5 59383658 NT_034772.7 9273851
ss221384 OVLP-000621-3786 G/T 4 rs165957 0 5 80630554 NT_034772.7 30520747
ss221370 OVLP-000621-2304 C/T 4 rs165945 1 5 88814521 NT_034772.7 38704714
ss221369 OVLP-000621-2303 A/G 4 rs165944 0 5 88814546 NT_034772.7 38704739
ss221385 OVLP-000621-3805 A/G 4 rs149078 0 5 96779489 NT_034772.7 46669682
ss221357 OVLP-000621-70 C/T 4 rs151809 1 5 110785215 NT_034772.7 60675408
ss221359 OVLP-000621-871 A/G 4 rs165939 0 5 111161867 NT_034772.7 61052060
ss221382 OVLP-000621-3682 C/G 4 rs165956 0 5 134076539 NT_034772.7 83966732
ss221383 OVLP-000621-3687 A/G 4 rs152402 1 5 134142650 NT_034772.7 84032843
ss221378 OVLP-000621-2934 C/T 4 rs165952 0 5 155866529 NT_023133.14 105205
ss221379 OVLP-000621-2977 C/G 4 rs165953 0 5 155873076 NT_023133.14 111752
ss221377 OVLP-000621-2920 C/T 4 rs165951 0 5 155922833 NT_023133.14 161509
ss221358 OVLP-000621-102 A/T 4 rs165938 0 5 166948334 NT_023133.14 11187010
ss221375 OVLP-000621-2709 A/G 4 rs165950 0 5 168471165 NT_023133.14 12709841
ss221374 OVLP-000621-2706 A/G 4 rs165949 0 5 168475030 NT_023133.14 12713706
ss221373 OVLP-000621-2700 C/T 4 rs165948 0 5 168507388 NT_023133.14 12746064
ss221368 OVLP-000621-2028 G/T 4 rs165943 1 5 177104856 NT_023133.14 21343532
ss221361 OVLP-000621-1460 A/C 4 N.D. N.D.
30 of 3445 subsnp's starting at ss221376. ss# starting at ss

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