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View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000925-5-9
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:69
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1976975 OVLP-000925-370179 A/G 4 rs864585 0 1 48021702 NT_032977.10 47435714
ss1976963 OVLP-000925-280796 A/G 4 rs183858 0 1 112135938 NT_032977.10 111549950
ss1976953 OVLP-000925-152374 C/T 4 rs184906 0 10 8806978 NT_008705.17 8796978
ss1976970 OVLP-000925-328659 C/T 4 rs650019 0 10 77455455 NT_030059.14 35761934
ss1976972 OVLP-000925-343946 G/T 4 rs538698 0 11 80006568 NT_167190.2 25481494
ss1976958 OVLP-000925-192962 C/G 4 rs619546 0 11 112706851 NT_033899.9 24703955
ss1976951 OVLP-000925-151050 A/G 4 rs577651 0 11 117601110 NT_033899.9 29598214
ss1976955 OVLP-000925-157173 G/T 4 rs608076 0 11 117676136 NT_033899.9 29673240
ss1976956 OVLP-000925-182948 A/G 4 rs1271170 0 11 117904630 NT_033899.9 29901734
ss1976954 OVLP-000925-153527 A/C 4 rs400038 0 12 41119569 NT_029419.13 3884317
ss1976966 OVLP-000925-287269 G/T 4 rs1271174 0 12 62640979 NT_029419.13 25405727
ss1976964 OVLP-000925-284260 A/G 4 rs699560 0 12 62674350 NT_029419.13 25439098
ss1976952 OVLP-000925-152264 C/G 4 rs1268897 0 12 64942526 NT_029419.13 27707274
ss1976968 OVLP-000925-312533 C/T 4 rs593470 0 18 2822847 NT_010859.15 2812847
ss1976969 OVLP-000925-318104 A/G 4 rs593470 1 18 2822847 NT_010859.15 2812847
ss1976962 OVLP-000925-263429 G/T 4 rs488841 0 18 36726846 NT_010966.15 15815640
ss1976961 OVLP-000925-263414 A/C 4 rs1271172 0 18 36802635 NT_010966.15 15891429
ss1976947 OVLP-000925-36474 A/T 4 rs1271166 0 18 59262577 NT_010966.15 38351371
ss1976959 OVLP-000925-234205 C/T 4 rs497345 0 18 60561806 NT_010966.15 39650600
ss1976948 OVLP-000925-93383 G/T 4 rs1270766 0 18 64118948 NT_010966.15 43207742
ss1976967 OVLP-000925-287629 C/T 4 rs470774 0 18 76968413 NT_010966.15 56057207
ss1976971 OVLP-000925-332528 C/T 4 rs1092312 0 3 99189314 NT_005612.17 5483740
ss1976976 OVLP-000925-373280 C/T 4 rs1154268 0 3 112958962 NT_005612.17 19253388
ss1976949 OVLP-000925-131750 A/G 4 rs1270788 1 3 142873196 NT_005612.17 49167622
ss1976957 OVLP-000925-186585 G/T 4 rs184933 0 4 21827998 NT_006316.17 13011521
ss1976973 OVLP-000925-347522 A/G 4 rs184897 0 4 46324598 NT_006238.12 13485582
ss1976965 OVLP-000925-285618 A/G 4 rs579228 0 4 74144184 NT_016354.20 15222803
ss1976960 OVLP-000925-237491 C/T 4 rs42417 0 5 94862585 NT_034772.7 44752778
ss1976950 OVLP-000925-134323 A/G 4 rs690438 0 8 95789242 NT_008046.17 10075020
ss1976974 OVLP-000925-360815 A/T 4 N.D. N.D.
30 of 69 subsnp's starting at ss1976975. ss# starting at ss

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