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    LOC100002283 zinc finger protein 271-like [ Danio rerio (zebrafish) ]

    Gene ID: 100002283, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC100002283
    Gene description
    zinc finger protein 271-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See LOC100002283 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (7212431..7237694, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7329427..7351659, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene wu:fb44c10 Neighboring gene zinc finger protein 595-like Neighboring gene zinc finger protein 160-like Neighboring gene zgc:113102

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: zinc finger protein 208-like; zinc finger protein 271-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      7212431..7237694 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474887.1 → XP_021330562.1  LOW QUALITY PROTEIN: zinc finger protein 208-like isoform X1

      UniProtKB/TrEMBL
      A0A8M9PGX4
      Conserved Domains (2) summary
      COG5048
      Location:192 → 604
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:868 → 888
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394517.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      327858..332211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471350.1 → XP_021327025.1  zinc finger protein 271-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q0W6
      Conserved Domains (2) summary
      COG5048
      Location:2 → 242
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:142 → 162
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395225.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      355108..359684 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473963.1 → XP_021329638.1  zinc finger protein 271-like isoform X3

      UniProtKB/TrEMBL
      A0A8M9PRI4
      Conserved Domains (2) summary
      COG5048
      Location:6 → 221
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:121 → 141
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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