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    si:busm1-sl7.7 si:busm1-sl7.7 [ Danio rerio (zebrafish) ]

    Gene ID: 100034638, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:busm1-sl7.7provided by ZNC
    Official Full Name
    si:busm1-sl7.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041001-38
    See related
    AllianceGenome:ZFIN:ZDB-GENE-041001-38
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See si:busm1-sl7.7 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (9095392..9108885, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (8763471..8804441, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene HtrA serine peptidase 2-3 Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene serine/threonine-protein kinase pim-1-like Neighboring gene serine protease HTRA2, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    serine protease HTRA2, mitochondrial; uncharacterized protein LOC100034638
    Names
    novel serine protease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      9095392..9108885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480934.1 → XP_021336609.1  serine protease HTRA2, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A8M9QG75
      Conserved Domains (1) summary
      cl28339
      Location:41 → 306
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394865.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      109390..163070 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472652.1 → XP_021328327.1  serine protease HTRA2, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A8M9PBC0, A7MC74
      Conserved Domains (1) summary
      cl28339
      Location:1 → 177
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

    2. XM_021472653.1 → XP_021328328.1  serine protease HTRA2, mitochondrial isoform X3

      UniProtKB/TrEMBL
      A0A8M9PMT6
      Conserved Domains (1) summary
      cl28339
      Location:1 → 113
      DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

    RNA

    1. XR_002457362.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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