U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100261114 CHD3-type chromatin-remodeling factor PICKLE [ Vitis vinifera (wine grape) ]

    Gene ID: 100261114, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100261114
    Gene description
    CHD3-type chromatin-remodeling factor PICKLE
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0000166 GO:0003677 GO:0003676 GO:0005524 GO:0003682 GO:0004386 GO:0006333; GO:0005524 GO:0000166 GO:0003677 GO:0003676 GO:0003682 GO:0004386 GO:0000785 GO:0005634 GO:0006333; GO:0000166 GO:0003677 GO:0003676 GO:0005524 GO:0003682 GO:0004386 GO:0000785 GO:0005634 GO:0006333 GO:0006355
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100261114 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (5517598..5586068)
    102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (5518737..5591676)

    Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100252509 Neighboring gene chaperone protein ClpB4, mitochondrial Neighboring gene brassinosteroid-related acyltransferase 1 Neighboring gene two-component response regulator ARR12

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CHD3-type chromatin-remodeling factor PICKLE

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

      Range
      5517598..5586068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002282882.5 → XP_002282918.2  CHD3-type chromatin-remodeling factor PICKLE

      UniProtKB/TrEMBL
      F6H3J1
      Conserved Domains (9) summary
      smart00249
      Location:54 → 95
      PHD; PHD zinc finger
      smart00298
      Location:194 → 241
      CHROMO; Chromatin organization modifier domain
      cd00024
      Location:102 → 160
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:306 → 466
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:289 → 586
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:607 → 722
      Helicase_C; Helicase conserved C-terminal domain
      pfam06461
      Location:934 → 1070
      DUF1086; Domain of Unknown Function (DUF1086)
      pfam06465
      Location:850 → 905
      DUF1087; Domain of Unknown Function (DUF1087)
      pfam08074
      Location:1084 → 1110
      CHDCT2; CHDCT2 (NUC038) domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials