U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    sybu syntabulin (syntaxin-interacting) [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100697978, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    sybu
    Gene description
    syntabulin (syntaxin-interacting)
    See related
    Ensembl:ENSONIG00000000055
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Biased expression in brain (RPKM 93.2), eye (RPKM 51.4) and 4 other tissues See more
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sybu in Genome Data Viewer
    Location:
    chromosome: LG11
    Exon count:
    10
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (14197207..14210809)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (16840070..16853648)

    Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene ENY2 transcription and export complex 2 subunit Neighboring gene growth differentiation factor 6a Neighboring gene estrogen receptor binding site associated antigen 9 Neighboring gene ttk protein kinase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in axonal transport of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synapse maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    syntabulin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      14197207..14210809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005472578.4 → XP_005472635.1  syntabulin isoform X1

      See identical proteins and their annotated locations for XP_005472635.1

      UniProtKB/TrEMBL
      I3ITX7
      Conserved Domains (1) summary
      pfam15290
      Location:222 → 403
      Syntaphilin; Golgi-localized syntaxin-1-binding clamp

    2. XM_005472579.4 → XP_005472636.1  syntabulin isoform X1

      See identical proteins and their annotated locations for XP_005472636.1

      UniProtKB/TrEMBL
      I3ITX7
      Conserved Domains (1) summary
      pfam15290
      Location:222 → 403
      Syntaphilin; Golgi-localized syntaxin-1-binding clamp

    3. XM_005472577.4 → XP_005472634.1  syntabulin isoform X1

      See identical proteins and their annotated locations for XP_005472634.1

      UniProtKB/TrEMBL
      I3ITX7
      Related
      ENSONIP00000000066.2, ENSONIT00000000066.2
      Conserved Domains (1) summary
      pfam15290
      Location:222 → 403
      Syntaphilin; Golgi-localized syntaxin-1-binding clamp

    4. XM_019364815.2 → XP_019220360.1  syntabulin isoform X2

    5. XM_005472581.3 → XP_005472638.1  syntabulin isoform X3

      Conserved Domains (1) summary
      pfam15290
      Location:96 → 277
      Syntaphilin; Golgi-localized syntaxin-1-binding clamp
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.