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    APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 [ Mustela putorius furo (domestic ferret) ]

    Gene ID: 101678854, updated on 8-Mar-2024

    Summary

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    Gene symbol
    APOBEC1
    Gene description
    apolipoprotein B mRNA editing enzyme catalytic subunit 1
    See related
    Ensembl:ENSMPUG00000017532
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mustela putorius furo (sub-species: furo)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
    Orthologs
    human mouse all
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    Genomic context

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    See APOBEC1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025422368.1 (39096325..39106601, complement)
    101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569176.1 (14038911..14049265)

    NW_025422368.1Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 5 Neighboring gene U6 spliceosomal RNA Neighboring gene activation induced cytidine deaminase Neighboring gene lysosomal-associated transmembrane protein 4A-like Neighboring gene growth differentiation factor 3 Neighboring gene developmental pluripotency associated 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The antiretroviral potency of APOBEC1 deaminase from small animal species. Ikeda T, et al. Nucleic Acids Res, 2008 Dec. PMID 18971252, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C->U-editing enzyme APOBEC-1
    Names
    apolipoprotein B mRNA editing protein
    NP_001297092.1
    XP_044928772.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310163.1 → NP_001297092.1  C->U-editing enzyme APOBEC-1

      See identical proteins and their annotated locations for NP_001297092.1

      Status: PROVISIONAL

      Source sequence(s)
      AB425821
      UniProtKB/TrEMBL
      B2NIW5
      Conserved Domains (3) summary
      pfam05240
      Location:125 → 177
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:52 → 157
      APOBEC_N; APOBEC-like N-terminal domain
      cl00269
      Location:33 → 120
      cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...

    RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1176430v1.1 Primary Assembly

    Genomic

    1. NW_025422368.1 Reference ASM1176430v1.1 Primary Assembly

      Range
      39096325..39106601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045072837.1 → XP_044928772.1  C->U-editing enzyme APOBEC-1 isoform X1

      UniProtKB/TrEMBL
      A0A8U0RT49
      Conserved Domains (1) summary
      cl00269
      Location:4 → 71
      cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
    Nucleotide Protein
    Heading Accession and Version

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