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    Lpp LIM domain containing preferred translocation partner in lipoma [ Marmota marmota marmota (Alpine marmot) ]

    Gene ID: 107154372, updated on 14-Mar-2024

    Summary

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    Gene symbol
    Lpp
    Gene description
    LIM domain containing preferred translocation partner in lipoma
    See related
    Ensembl:ENSMMMG00000009476
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Marmota marmota marmota (sub-species: marmota)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Marmota
    Orthologs
    human mouse all
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    Genomic context

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    See Lpp in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current marMar (GCF_001458135.2) Unplaced Scaffold NW_025999969.1 (4433742..5041825)
    100 previous assembly marMar2.1 (GCF_001458135.1) Unplaced Scaffold NW_015351275.1 (4548224..5028523)

    NW_025999969.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107154366 Neighboring gene uncharacterized LOC107154369 Neighboring gene uncharacterized LOC125617100 Neighboring gene tumor protein p63 regulated 1 Neighboring gene tumor protein p63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoma-preferred partner

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Marmota marmota marmota Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference marMar

    Genomic

    1. NW_025999969.1 Reference marMar

      Range
      4433742..5041825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015499986.2 → XP_015355472.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40
      Related
      ENSMMMP00000010640.1
      Conserved Domains (3) summary
      cd09350
      Location:416 → 469
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:476 → 528
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cl02475
      Location:536 → 601
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. XM_048804054.1 → XP_048660011.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    3. XM_048804052.1 → XP_048660009.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    4. XM_048804053.1 → XP_048660010.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    5. XM_048804056.1 → XP_048660013.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    6. XM_048804059.1 → XP_048660016.1  lipoma-preferred partner isoform X2

    7. XM_048804057.1 → XP_048660014.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    8. XM_048804051.1 → XP_048660008.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    9. XM_048804055.1 → XP_048660012.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    10. XM_048804058.1 → XP_048660015.1  lipoma-preferred partner isoform X1

      UniProtKB/TrEMBL
      A0A8C5ZB40

    11. XM_048804060.1 → XP_048660017.1  lipoma-preferred partner isoform X3

    12. XM_048804061.1 → XP_048660018.1  lipoma-preferred partner isoform X3

    Nucleotide Protein
    Heading Accession and Version

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