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    CNTN1 contactin 1 [ Phasianus colchicus (Ring-necked pheasant) ]

    Gene ID: 116226654, updated on 18-Mar-2024

    Summary

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    Gene symbol
    CNTN1
    Gene description
    contactin 1
    See related
    Ensembl:ENSPCLG00000002992
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phasianus colchicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Phasianus
    Orthologs
    human mouse all
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    Genomic context

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    See CNTN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current ASM414374v1 (GCF_004143745.1) Unplaced Scaffold NW_022205351.1 (14467893..14707986, complement)

    NW_022205351.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116226653 Neighboring gene uncharacterized LOC116226652 Neighboring gene uncharacterized LOC116226693 Neighboring gene neuronal cell adhesion molecule

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022205351 Unplaced Scaffold Reference ASM414374v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phasianus colchicus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM414374v1 Primary Assembly

    Genomic

    1. NW_022205351.1 Reference ASM414374v1 Primary Assembly

      Range
      14467893..14707986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031589583.1 → XP_031445443.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A669PAS0
      Related
      ENSPCLP00000003478.1, ENSPCLT00000004772.1
      Conserved Domains (7) summary
      cd05727
      Location:126 → 222
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05851
      Location:232 → 319
      Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
      cd05852
      Location:420 → 492
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cd00063
      Location:601 → 692
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd04970
      Location:511 → 592
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      pfam00041
      Location:803 → 883
      fn3; Fibronectin type III domain
      cl11960
      Location:32 → 124
      Ig; Immunoglobulin domain

    2. XM_031589584.1 → XP_031445444.1  contactin-1 isoform X2

      Conserved Domains (6) summary
      cd05727
      Location:126 → 222
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
      cd05851
      Location:232 → 319
      Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
      cd05852
      Location:420 → 492
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cd00063
      Location:601 → 692
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd04970
      Location:511 → 592
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cl11960
      Location:32 → 124
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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