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    LOC127826897 H3K4me1 hESC enhancer GRCh37_chr13:111110889-111111697 [ Homo sapiens (human) ]

    Gene ID: 127826897, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC127826897
    Gene description
    H3K4me1 hESC enhancer GRCh37_chr13:111110889-111111697
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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    Genomic context

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    See LOC127826897 in Genome Data Viewer
    Location:
    chromosome: 13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (110458542..110459350)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (109689012..109689820)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene collagen type IV alpha 2 chain Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5501 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:110994550-110995499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:110995500-110996448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:110999397-111000255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111005255-111005767 Neighboring gene microRNA 8073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111012706-111013206 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111013207-111013707 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111031805-111032755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111039396-111040260 Neighboring gene Sharpr-MPRA regulatory region 13414 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7992 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098314-111098814 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111098815-111099315 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:111100302-111101501 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111110079-111110888 Neighboring gene COL4A2 antisense RNA 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111122078-111122283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111125311-111125885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111127041-111127679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7999 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111136580-111137418 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111137419-111138256 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111138257-111139094 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111139095-111139931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144038-111144573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111144574-111145108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111151293-111151792 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111155195-111156124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111159947-111160448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111160449-111160948 Neighboring gene COL4A2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111164263-111164891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111166617-111167116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111170170-111171006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8003 Neighboring gene Sharpr-MPRA regulatory region 8993 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:111183105-111183721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111186543-111187325 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5502 Neighboring gene RAB20, member RAS oncogene family Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111209741-111210264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:111210265-111210787 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:111213668-111213857

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_128402.1 

      Range
      101..909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      110458542..110459350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      109689012..109689820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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