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    TRM12 Trm12p [ Candida albicans SC5314 ]

    Gene ID: 3641738, updated on 30-Nov-2023

    Summary

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    Gene symbol
    TRM12
    Gene description
    Trm12p
    Locus tag
    CAALFM_C305890WA
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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    Genomic context

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    See TRM12 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_032091.1 (1321857..1323116)

    Chromosome 3 - NC_032091.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-specific protease Neighboring gene uncharacterized protein Neighboring gene cationic amino acid transporter Neighboring gene Zcf35p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_032091.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
    2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
    3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wybutosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Trm12p
    XP_716610.1
    • Ortholog(s) have S-adenosylmethionine-dependent methyltransferase activity, transferase activity, transferring alkyl or aryl (other than methyl) groups activity and role in tRNA methylation, wybutosine biosynthetic process

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_032091.1 Reference assembly

      Range
      1321857..1323116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_711517.1 → XP_716610.1  Trm12p [Candida albicans SC5314]

      See identical proteins and their annotated locations for XP_716610.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1D8PKC5, A0A8H6F5K5, C4YNW5
      Conserved Domains (1) summary
      COG2520
      Location:221 → 417
      Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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