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    trim28.L tripartite motif containing 28 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 734995, updated on 25-Jan-2024

    Summary

    Official Symbol
    trim28.L
    Official Full Name
    tripartite motif containing 28 L homeolog
    Primary source
    Xenbase:XB-GENE-1005539
    Locus tag
    XELAEV_18035836mg
    See related
    EnsemblRapid:ENSXLAG00005035375
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    kap1; tf1b; rnf96; tif1b; trim28
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    Genomic context

    See trim28.L in Genome Data Viewer
    Location:
    chromosome: 7L
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (107812136..107847105)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (97413436..97448764)

    Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 45 L homeolog Neighboring gene THAP domain containing 7 L homeolog Neighboring gene uncharacterized LOC121395599 Neighboring gene uncharacterized LOC121395600 Neighboring gene ubiquitin conjugating enzyme E2M L homeolog

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    tripartite motif containing 28 L homeolog
    Names
    tripartite motif-containing 28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096457.1NP_001089926.1  tripartite motif containing 28 L homeolog

      See identical proteins and their annotated locations for NP_001089926.1

      Status: PROVISIONAL

      Source sequence(s)
      BC110746
      UniProtKB/TrEMBL
      A0A974HCX6, Q2TAS5
      Conserved Domains (5) summary
      cd05502
      Location:533634
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00336
      Location:3972
      BBOX; B-Box-type zinc finger
      cd00021
      Location:94132
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15623
      Location:474516
      PHD_TIF1beta; PHD finger found in transcription intermediary factor 1-beta (TIF1-beta)
      cl23765
      Location:139264
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      107812136..107847105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018224636.2XP_018080125.1  tripartite motif containing 28 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8FMQ6, A0A974HCH2, A0A974HCX6
      Related
      ENSXLAP00005105789.1, ENSXLAT00005107858.1
    2. XM_018224639.2XP_018080128.1  tripartite motif containing 28 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0T6H8, A0A974HCX6
    3. XM_018224637.2XP_018080126.1  tripartite motif containing 28 L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J0T9N7, A0A974HCX6