U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ube2d4 ubiquitin conjugating enzyme E2D 4 (putative) [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100497147, updated on 25-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ube2d4provided by Xenbase
    Official Full Name
    ubiquitin conjugating enzyme E2D 4 (putative)provided by Xenbase
    Primary source
    Xenbase:XB-GENE-962537
    See related
    Ensembl:ENSXETG00000019014
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    HBUCE1; ube2d3.2
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (126696620..126711385, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (107529895..107544876)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene ELMO/CED-12 domain containing 3 Neighboring gene drebrin like Neighboring gene transcription factor 7 like 1 Neighboring gene trans-golgi network protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ubiquitin-conjugating enzyme E2 D4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      126696620..126711385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002932549.5 → XP_002932595.1  ubiquitin-conjugating enzyme E2 D4 isoform X2

      See identical proteins and their annotated locations for XP_002932595.1

      UniProtKB/TrEMBL
      B0JYU2, F6VCY8
      Related
      ENSXETP00000041238.3, ENSXETT00000041238.5
      Conserved Domains (1) summary
      cl00154
      Location:1 → 146
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_012959439.3 → XP_012814893.1  ubiquitin-conjugating enzyme E2 D4 isoform X3

      See identical proteins and their annotated locations for XP_012814893.1

      UniProtKB/TrEMBL
      A0A8J0SG95, B0JYU2
      Conserved Domains (2) summary
      COG5078
      Location:1 → 137
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cl00154
      Location:2 → 136
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_004912568.4 → XP_004912625.1  ubiquitin-conjugating enzyme E2 D4 isoform X3

      See identical proteins and their annotated locations for XP_004912625.1

      UniProtKB/TrEMBL
      A0A8J0SG95, B0JYU2
      Conserved Domains (2) summary
      COG5078
      Location:1 → 137
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cl00154
      Location:2 → 136
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    4. XM_012959438.3 → XP_012814892.1  ubiquitin-conjugating enzyme E2 D4 isoform X1

      UniProtKB/TrEMBL
      A0A803K2G6, B0JYU2
      Related
      ENSXETP00000114509.1, ENSXETT00000113773.1
      Conserved Domains (2) summary
      COG5078
      Location:21 → 159
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      cl00154
      Location:21 → 158
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.