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    MCM9 minichromosome maintenance 9 homologous recombination repair factor [ Gallus gallus (chicken) ]

    Gene ID: 100857742, updated on 3-Apr-2024

    Summary

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    Symbol
    MCM9provided by CGNC
    Full Name
    minichromosome maintenance 9 homologous recombination repair factorprovided by CGNC
    Primary source
    CGNC:66117
    See related
    Ensembl:ENSGALG00010015028
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (62408055..62466954)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (62314502..62361884)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1A member 1 Neighboring gene uncharacterized LOC121110283 Neighboring gene family with sequence similarity 184 member A Neighboring gene uncharacterized LOC121110284 Neighboring gene histone chaperone ASF1-like Neighboring gene anti-silencing function 1A histone chaperone Neighboring gene centrosomal protein 85 like Neighboring gene phospholamban Neighboring gene microRNA 199b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mcm8 and Mcm9 form a complex that functions in homologous recombination repair induced by DNA interstrand crosslinks. Nishimura K, et al. Mol Cell, 2012 Aug 24. PMID 22771115
    2. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. International Chicken Genome Sequencing Consortium. Nature, 2004 Dec 9. PMID 15592404
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MCM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA helicase MCM9
    Names
    DNA replication licensing factor MCM9
    minichromosome maintenance complex component 9
    NP_001385126.1
    XP_040552615.1
    XP_040552616.1
    XP_046768789.1
    XP_046768790.1
    XP_046768791.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398197.1 → NP_001385126.1  DNA helicase MCM9

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      Conserved Domains (2) summary
      cd17760
      Location:307 → 605
      MCM9; DNA helicase Mcm9
      pfam17207
      Location:118 → 245
      MCM_OB; MCM OB domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      62408055..62466954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040696681.2 → XP_040552615.1  DNA helicase MCM9 isoform X1

      UniProtKB/Swiss-Prot
      F1N960, I0IUP4
      Related
      ENSGALP00010020995.1, ENSGALT00010036136.1
      Conserved Domains (2) summary
      cd17760
      Location:307 → 605
      MCM9; DNA helicase Mcm9
      pfam17207
      Location:118 → 245
      MCM_OB; MCM OB domain

    2. XM_040696682.2 → XP_040552616.1  DNA helicase MCM9 isoform X2

      Conserved Domains (1) summary
      COG1241
      Location:12 → 345
      Mcm2; DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      62314502..62361884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046912833.1 → XP_046768789.1  DNA helicase MCM9 isoform X1

    2. XM_046912835.1 → XP_046768791.1  DNA helicase MCM9 isoform X2

    3. XM_046912834.1 → XP_046768790.1  DNA helicase MCM9 isoform X3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001305089.1: Suppressed sequence

      Description
      NM_001305089.1: This RefSeq was removed because currently there is insufficient support for the transcript
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    I0IUP4.2 GenPept UniProtKB/Swiss-Prot:I0IUP4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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