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    CZ1P-ASNS CZ1P-ASNS readthrough [ Homo sapiens (human) ]

    Gene ID: 107986827, updated on 10-Oct-2023

    Summary

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    Gene symbol
    CZ1P-ASNS
    Gene description
    CZ1P-ASNS readthrough
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus represents naturally occurring readthrough transcription between the neighboring CCZ1P (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated pseudogene) and ASNS (asparagine synthetase) genes on chromosome 7. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jun 2017]
    Expression
    Ubiquitous expression in skin (RPKM 1.5), spleen (RPKM 1.0) and 23 other tissues See more
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    Genomic context

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    Location:
    7q21.3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (97852117..97972358, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (99082171..99202450, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (97481429..97601670, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97243215-97243758 Neighboring gene RN7SK pseudogene 104 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:97360557-97361756 Neighboring gene tachykinin precursor 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:97407865-97408366 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:97475873-97476053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18386 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97501601-97502316 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26303 Neighboring gene RPS3A pseudogene 29 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:97586255-97586755 Neighboring gene CCZ1P-OR7E38P readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18389 Neighboring gene olfactory receptor family 7 subfamily E member 7 pseudogene Neighboring gene microRNA 5692a-1 Neighboring gene microRNA 5692c-2 Neighboring gene olfactory receptor family 7 subfamily E member 38 pseudogene Neighboring gene CCZ1 pseudogene 1 Neighboring gene RNA, 7SL, cytoplasmic 478, pseudogene Neighboring gene oncomodulin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Readthrough CZ1P-ASNS

    Included genes: ASNS, CCZ1P1

    Clone Names

    • FLJ43176, FLJ99734

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147989.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004967, AC005326, AC079781, BC030024

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      97852117..97972358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      99082171..99202450 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013725.1: Suppressed sequence

      Description
      NM_001013725.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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