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Report for CCDS48787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48787.1 Public Mus musculus 11 Hnrnpab 23 108 98 CCDS HistoryNCBI Gene:15384Re-query CCDS DB by CCDS ID:48787.1Re-query CCDS DB by GeneID:15384See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109103.3 ENSMUSP00000104731.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109103.3Link to Ensembl Protein Viewer:ENSMUSP00000104731.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109103Re-query CCDS DB by Protein ID:ENSMUSP00000104731
Original member Current member NCBI NM_001048061.1 NP_001041526.1 Accepted alive Link to Nucleotide Sequence:NM_001048061.1Link to Protein Sequence:NP_001041526.1Re-query CCDS DB by Nucleotide ID:NM_001048061Re-query CCDS DB by Protein ID:NP_001041526Link to BLAST:NP_001041526.1

Chromosomal Locations for CCDS 48787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51601408 51601478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51601750 51601890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51602593 51602695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51604400 51604531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51604659 51604817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51605461 51605629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51606340 51606563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTCGGACGCGGCTGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACACGAGGCCGCCC
CCGAAGGCGAGGCCCCGGTCGAGCCCAGCGCGGCTGCCGCGGCCCCCGCGGCCTCGGCCGGGTCTGGGGG
CGGGACCACGACCGCACCGAGCGGGAACCAGAACGGCGCGGAGGGCGACCAGATCAACGCCAGCAAGAAC
GAGGAGGACGCGGGAAAAATGTTCGTTGGTGGTCTGAGCTGGGATACCAGCAAAAAAGACTTAAAGGATT
ATTTTACTAAGTTTGGAGAGGTTGTTGACTGTACAATAAAAATGGATCCCAACACTGGACGATCAAGAGG
GTTTGGGTTTATTCTCTTCAAAGATTCTTCTAGTGTGGAAAAGGTCTTAGATCAGAAGGAGCACAGGCTG
GATGGTCGTGTCATTGACCCTAAAAAGGCTATGGCTATGAAGAAGGACCCTGTGAAGAAAATCTTTGTGG
GAGGTCTAAACCCTGAAGCCACAGAGGAAAAGATCAGAGAATACTTCGGCCAGTTTGGGGAGATTGAGGC
CATTGAGCTTCCAATAGATCCCAAGTTGAACAAAAGACGGGGTTTTGTTTTTATTACATTTAAAGAGGAA
GATCCTGTGAAGAAAGTTCTGGAGAAGAAATTTCATACTGTCAGTGGAAGCAAGTGTGAAATCAAGGTTG
CCCAGCCCAAAGAGGTGTATCAGCAACAGCAGTATGGCTCTGGGGGCAGAGGAAATCGCAATCGAGGGAA
CCGAGGCAGTGGTGGAGGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTAC
GGCTACCAGCAGGGCTACGGGCCGGGCTATGGCGGCTACGACTACTCGCCCTATGGCTATTACGGCTACG
GCCCCGGCTACGACTACAGTCAGGGTAGTACAAATTACGGAAAGAGCCAGCGACGTGGTGGTCATCAGAA
TAACTACAAGCCATACTGA

Translation (332 aa):
MSDAAEEQPMETTGATENGHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQNGAEGDQINASKN
EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRL
DGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEE
DPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGY
GYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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