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Report for CCDS23950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23950.1 Public Mus musculus 10 Ftcd 23 108 98 CCDS HistoryNCBI Gene:14317Re-query CCDS DB by CCDS ID:23950.1Re-query CCDS DB by GeneID:14317See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001183.7 ENSMUSP00000001183.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001183.7Link to Ensembl Protein Viewer:ENSMUSP00000001183.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001183Re-query CCDS DB by Protein ID:ENSMUSP00000001183
Original member Current member NCBI NM_080845.2 NP_543121.1 Accepted alive Link to Nucleotide Sequence:NM_080845.2Link to Protein Sequence:NP_543121.1Re-query CCDS DB by Nucleotide ID:NM_080845Re-query CCDS DB by Protein ID:NP_543121Link to BLAST:NP_543121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543121.1 541 Q91XD4 541 100% 0 0

Chromosomal Locations for CCDS 23950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 76575706 76575759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76576501 76576684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76578002 76578130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76579783 76579871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76579990 76580169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76581295 76581432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76581503 76581634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76583811 76583872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76584170 76584299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76584532 76584693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76587133 76587176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76587301 76587439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76588070 76588165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 76589226 76589312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTCTCAGTTGGTGGAATGTGTCCCCAACTTCTCAGAGGGGAACAACCAGGAGGTGATTGATGCCATCT
CTCGAGCCATCTCCCAGACCCCAGGCTGTGTGCTGTTGGACGTCGATGCCGGACCCTCCACCAACCGCAC
TGTCTACACTTTCGTGGGGCAGCCAGAGTGTGTCGTAGAGGGGGCCCTCCATGCTGCGCGTACGGCCTCA
CAGCTCATCGACATGAGCAAGCACAAGGGTGAGCACCCTCGAATGGGCGCTCTGGATGTGTGTCCCTTCA
TCCCGGTGAGGGGCGTCAGCATGGAAGAGTGTGTGCTCTGTGCCAAGGCATTTGGGCAGCGGCTGGCAGA
GGAACTTAATGTACCAGTGTATCTCTATGGTGAGGCAGCTCAGACGCCCAGTCGTCAGACCCTGCCAGCC
ATCCGGGCTGGAGAGTATGAGGCCCTGCCTGAGAAGCTCAAACAGGCCGAGTGGGTGCCAGACTTTGGCC
CTAGCTCCTTTGTCCCCAGTTGGGGTGCTACTGTCACGGGTGCACGGAAGTTCCTCATTGCATTCAATAT
CAACCTGCTAAGCACCAAGGAGCAGGCCCACCGTATTGCTCTTAACCTGCGGGAGCAGGGCCGAGGGAAA
GACCAGCCTGGACGTCTGAAAAAGGTCCAGGGCATCGGTTGGTACCTGGAAGAGAAGAACCTGGCTCAGG
TGTCCACAAACCTCCTGGACTTTGAGGTCACAGCTCTGCACACAGTGTTTGAGGAGGCCCGCAGAGAGGC
TCAGGAGCTGAATCTCCCAGTGGTGGGCTCGCAGCTGGTGGGCCTGGTGCCTCTGAAGGCCTTACTGGAT
GCCGCAGCCTTCTACTGTGACAAGGAGAAGCTGTTTGTTCTGGAGGAGGAGCATCGGATACGGCTGGTGG
TGAACCGGCTGGGCCTGGATTCGCTGGCACCCTTCGACCCAAAGGAACGGATCATCGAGTACCTAGTCCC
CGATAGTGGACCAGAACAGAGCCTGTTGGACACCTCACTGCGCGGTTTTGTTCGGGAGGTGGGAGCCCGC
TCTGCTGCCCCAGGAGGAGGTTCTGTAGCAGCAGCGGTAGCAGCTCTGGGTGCAGCCCTGGCTTCTATGG
TGGGCCAGATGACCTATGGCCGGCGCCAGTTTGATCACTTGGATTCCACAATGCGACGCCTGATCCCACC
CTTCCACGCAGCCTCTGCCCAGCTGACTTCATTGGTGGATGCTGATGCCCGGGCGTTTGCTGCCTGTTTG
GAGGCAATAAAGCTGCCCAAGAACACGCCTGAAGAGAGAGACAGGCGTGCATGCGCTCTGCAGGAGGGGC
TGAGACAGGCAGTCGCTGTGCCACTGAAACTGGCCGAGACTGTGTCCCAGCTATGGCCAGCGCTGCAGGA
GCTGGCCCACTGTGGGAACCTGTCCTGCTTGTCTGACCTGCAGGTGGCAGCCAAAGCCTTGGAGACAGGT
GTGTTTGGTGCGTACTTCAACGTGCTCATCAACCTGAAGGACATGACGGATGATGTATTTAAAGAGAAGA
CACACCATCGAATCTCCAGCCTTCTGCAGGAAGCCAAGACTCAGGCTGCGCTGGTGCTGGGTAGCCTAGA
AGCCCGAAAGGAGTGA

Translation (541 aa):
MSQLVECVPNFSEGNNQEVIDAISRAISQTPGCVLLDVDAGPSTNRTVYTFVGQPECVVEGALHAARTAS
QLIDMSKHKGEHPRMGALDVCPFIPVRGVSMEECVLCAKAFGQRLAEELNVPVYLYGEAAQTPSRQTLPA
IRAGEYEALPEKLKQAEWVPDFGPSSFVPSWGATVTGARKFLIAFNINLLSTKEQAHRIALNLREQGRGK
DQPGRLKKVQGIGWYLEEKNLAQVSTNLLDFEVTALHTVFEEARREAQELNLPVVGSQLVGLVPLKALLD
AAAFYCDKEKLFVLEEEHRIRLVVNRLGLDSLAPFDPKERIIEYLVPDSGPEQSLLDTSLRGFVREVGAR
SAAPGGGSVAAAVAALGAALASMVGQMTYGRRQFDHLDSTMRRLIPPFHAASAQLTSLVDADARAFAACL
EAIKLPKNTPEERDRRACALQEGLRQAVAVPLKLAETVSQLWPALQELAHCGNLSCLSDLQVAAKALETG
VFGAYFNVLINLKDMTDDVFKEKTHHRISSLLQEAKTQAALVLGSLEARKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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