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ASM328664v2

Organism name:
Aerococcus tenax (firmicutes)
Infraspecific name:
Strain: UMB3669
BioSample:
SAMN08895451
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2023/06/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003286645.2 (replaced)
RefSeq assembly accession:
GCF_003286645.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. v.1.5
Expected final version:
yes
Genome coverage:
1593.0x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore MinION

IDs: 16900801 [UID] 43423278 [GenBank] 43533278 [RefSeq]

See Genome Information for Aerococcus tenax

There are 12 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 12:45:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,991
CDSs (total)::1,911
Genes (coding)::1,836
CDSs (with protein)::1,836
Genes (RNA)::80
rRNAs::4, 6, 4 (5S, 16S, 23S)
complete rRNAs::4, 6, 4 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::75
CDSs (without protein)::75
Pseudo Genes (ambiguous residues)::0 of 75
Pseudo Genes (frameshifted)::63 of 75
Pseudo Genes (incomplete)::15 of 75
Pseudo Genes (internal stop)::2 of 75
Pseudo Genes (multiple problems)::5 of 75
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,082,347
Total ungapped length2,082,347
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003286675.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP127382.1=NZ_CP127382.1
Plasmid unnamed1CP127381.1=NZ_CP127381.1
Plasmid unnamed2CP127383.1=NZ_CP127383.1

Assembly statistics

MoleculeTotal
Length
All2,082,347
Chromosome 1,481,417
Plasmid unnamed1591,691
Plasmid unnamed29,239