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ASM328664v1

This assembly has been replaced. See current version

Organism name:: Aerococcus urinae (firmicutes)
Infraspecific name:: Strain: UMB3669
BioSample:: SAMN08895451
BioProject:: PRJNA316969
Submitter:: Loyola University Chicago
Date:: 2018/07/02
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003286645.1 (replaced)
RefSeq assembly accession:: GCF_003286645.1 (replaced)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QMHI01
Assembly method:: SPAdes v. 3.9.1
Expected final version:: yes
Genome coverage:: 224.85x
Sequencing technology:: Illumina MiSeq

IDs: 1785051 [UID] 6751828 [GenBank] 6820168 [RefSeq]

See Genome Information for Aerococcus urinae

Pathogen Detection Resources

There are 77 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003286645.3	=	GCF_003286645.3	ASM328664v3	Complete Genome	Latest GenBank, Latest RefSeq
GCA_003286645.2	=	GCF_003286645.2	ASM328664v2	Complete Genome	Replaced GenBank, Replaced RefSeq
GCA_003286645.1	=	GCF_003286645.1	ASM328664v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Bacteria available from Alan J Wolfe, awolfe@luc.edu.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::06/27/2018 15:08:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,876
CDS (total)::1,809
Genes (coding)::1,800
CDS (coding)::1,800
Genes (RNA)::67
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::4 of 9
Pseudo Genes (incomplete)::4 of 9
Pseudo Genes (internal stop)::1 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,036,703
Total ungapped length	2,036,449
Gaps between scaffolds	0
Number of scaffolds	31
Scaffold N50	153,106
Scaffold L50	5
Number of contigs	32
Contig N50	153,106
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	31

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ASM328664v1

See Genome Information for Aerococcus urinae

Pathogen Detection Resources

There are 77 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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