txid10092[orgn] AND "strain C57BL/6J"[All Fields] - GEO DataSets

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Select item 2001670901.

EC-catalytic subunit dependent erythroid precursor transcriptome

(Submitter supplied) We tested whether Dis3 and Exosc10 depletion impact erythropoiesis by interfering with RNA processing and generating an aberrant transcriptome.

Organism:: Mus musculus domesticus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL29744
12 Samples

Download data: TXT

Series

Accession:: GSE167090

ID:: 200167090

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000502182.

The organizational effects of testosterone on brain DNA methylome

(Submitter supplied) Analysis of DNA methylation in the bed nucleus of the stria terminalis/preoptic area and striatum in response to perinatal testosterone exposure. The hypothesis tested was that treatment of females with testosterone on the day of birth would lead to masculinization of the methylome in adulthood.

Organism:: Mus musculus domesticus

Type:: Methylation profiling by high throughput sequencing

Platform:: GPL17637
24 Samples

Download data: TXT

Series

Accession:: GSE50218

ID:: 200050218

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000290973.

Gene expression between high and low altitude Mus musculus domesticus

(Submitter supplied) Analysis of gene expression profiles is an attractive method for discovering how animals respond to environmental challenges in nature. Compared to low altitudes, high altitudes are characterized by reduced partial pressures of oxygen (hypoxia) and cooler ambient temperatures To better understand how mammals cope with high altitudes, we trapped wild house mice (Mus musculus domesticus) from 3 populations in La Paz, Bolivia (3000 - 3600 m) and 3 populations in Lima, Peru (0 – 200 m). more...

Organism:: Mus musculus domesticus; Mus musculus

Type:: Expression profiling by array

Platform:: GPL1261
18 Samples

Download data: CEL

Series

Accession:: GSE29097

ID:: 200029097

Analyze with GEO2R

Select item 2000196334.

Comparison of the testicular transcriptome of chromosomes 2, X, Y and the mitochondrial genome between two mouse species

(Submitter supplied) We used tiling arrays to compare the testicular expression of chromosomes 2, X, Y and the mitochondrial genome between Mus m. domesticus and Mus spretus. We found an excess of dysregulated non-coding RNAs on chromosome 2. This group consists of intronic antisense RNAs, intergenic RNAs and also premature forms of PIWI-interacting RNAs (piRNAs). The unique transcriptional regulation in spermatogenesis is a characteristic of chromosome X. more...

Organism:: Mus musculus; Mus musculus domesticus; Mus spretus

Type:: Expression profiling by genome tiling array

Platform:: GPL6445
6 Samples

Download data: BED, CEL

Series

Accession:: GSE19633

ID:: 200019633

PubMed Full text in PMC Similar studies

Select item 2000246435.

Validation and copy number variation in inbred and wild mice

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Mus musculus domesticus; Mus spretus; Mus musculus

Type:: Genome variation profiling by genome tiling array

Platforms:: GPL11047 GPL10992
81 Samples

Download data: PAIR

Series

Accession:: GSE24643

ID:: 200024643

Select item 2000244246.

Copy number variation in inbred and wild mice

(Submitter supplied) Copy number variants were determined in 3-5 males from 13 inbred laboratory mouse strains and 21 Mus musculus individuals caught in various geographic locations, using Nimblegen 385k arrays. CopyMap was used to predict CNVs.