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si:ch211-266g18.9 si:ch211-266g18.9 [ Danio rerio (zebrafish) ]

Gene ID: 101883291, updated on 11-Apr-2024

Summary

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Official Symbol
si:ch211-266g18.9provided by ZNC
Official Full Name
si:ch211-266g18.9provided by ZNC
Primary source
ZFIN:ZDB-GENE-131127-382
See related
Ensembl:ENSDARG00000075905 AllianceGenome:ZFIN:ZDB-GENE-131127-382
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in autophagy and endosomal vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be active in cytoplasm and membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch211-266g18.9 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (15580719..15603225, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (15582714..15584722, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene myristoylated alanine-rich protein kinase C substrate b Neighboring gene collagen, type X, alpha 1a Neighboring gene four and a half LIM domains 5 Neighboring gene fucosyltransferase 9a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in autophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in endosomal vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
si:ch211-266g18.9; transforming growth factor-beta receptor-associated protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    15580719..15603225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467382.1 → XP_021323057.1  transforming growth factor-beta receptor-associated protein 1-like

    UniProtKB/TrEMBL
    A0A8M6YTA3
    Conserved Domains (4) summary
    pfam10366
    Location:440 → 543
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:725 → 832
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:31 → 283
    CNH; CNH domain
    cl26078
    Location:581 → 687
    Clathrin; Region in Clathrin and VPS

  2. XM_017351789.2 → XP_017207278.2  transforming growth factor-beta receptor-associated protein 1-like

    UniProtKB/TrEMBL
    A0A8M6YTA3
    Related
    ENSDARP00000098645.3, ENSDART00000110272.4
    Conserved Domains (4) summary
    pfam10366
    Location:440 → 543
    Vps39_1; Vacuolar sorting protein 39 domain 1
    pfam10367
    Location:725 → 832
    Vps39_2; Vacuolar sorting protein 39 domain 2
    cl02434
    Location:31 → 283
    CNH; CNH domain
    cl26078
    Location:581 → 687
    Clathrin; Region in Clathrin and VPS
Nucleotide Protein Strain
Heading Accession and Version

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