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ITGAE integrin subunit alpha E [ Trachemys scripta elegans ]

Gene ID: 117867545, updated on 19-Mar-2024

Summary

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Gene symbol
ITGAE
Gene description
integrin subunit alpha E
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
35
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 18 NC_048315.1 (3406410..3454946)

Chromosome 18 - NC_048315.1Genomic Context describing neighboring genes Neighboring gene trichohyalin-like Neighboring gene uncharacterized LOC117867555 Neighboring gene transient receptor potential cation channel subfamily V member 2-like Neighboring gene histone H3 associated protein kinase Neighboring gene purinergic receptor P2X 5 Neighboring gene ER membrane protein complex subunit 6 Neighboring gene Tax1 binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048315.1 Chromosome 18 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048315.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    3406410..3454946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034752689.1 → XP_034608580.1  integrin alpha-E

Nucleotide Protein
Heading Accession and Version

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