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KALRN kalirin RhoGEF kinase [ Trachemys scripta elegans ]

Gene ID: 117885074, updated on 19-Mar-2024

Summary

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Gene symbol
KALRN
Gene description
kalirin RhoGEF kinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
61
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 11 NC_048308.1 (10273290..11012383)

Chromosome 11 - NC_048308.1Genomic Context describing neighboring genes Neighboring gene ropporin-1 Neighboring gene coiled-coil domain containing 14 Neighboring gene uridine monophosphate synthetase Neighboring gene integrin subunit beta 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048308.1 Chromosome 11 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kalirin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048308.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    10273290..11012383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034786199.1 → XP_034642090.1  kalirin isoform X7

  2. XM_034786196.1 → XP_034642087.1  kalirin isoform X4

  3. XM_034786193.1 → XP_034642084.1  kalirin isoform X2

  4. XM_034786192.1 → XP_034642083.1  kalirin isoform X1

  5. XM_034786195.1 → XP_034642086.1  kalirin isoform X3

  6. XM_034786198.1 → XP_034642089.1  kalirin isoform X6

  7. XM_034786197.1 → XP_034642088.1  kalirin isoform X5

  8. XM_034786203.1 → XP_034642094.1  kalirin isoform X11

  9. XM_034786200.1 → XP_034642091.1  kalirin isoform X8

  10. XM_034786201.1 → XP_034642092.1  kalirin isoform X9

  11. XM_034786202.1 → XP_034642093.1  kalirin isoform X10

Nucleotide Protein
Heading Accession and Version

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