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CANTEDRAFT_99696 WD40 repeat-like protein [ Yamadazyma tenuis ATCC 10573 ]

Gene ID: 18250874, updated on 23-Oct-2023

Summary

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Gene symbol
CANTEDRAFT_99696
Gene description
WD40 repeat-like protein
Locus tag
CANTEDRAFT_99696
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Yamadazyma tenuis ATCC 10573 (strain: ATCC 10573, culture-collection: ATCC:10573, type-material: type material of Yamadazyma tenuis)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Yamadazyma
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Genomic context

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Location:
chromosome: Unknown
Exon count:
1

NW_006281247.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ABC1-domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Septin-domain-containing protein Neighboring gene RWD-domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006281247.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Wohlbach DJ, et al. Proc Natl Acad Sci U S A, 2011 Aug 9. PMID 21788494, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD40 repeat-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006281247.1 Reference assembly

    Range
    599779..602112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006689347.1 → XP_006689410.1  WD40 repeat-like protein [Yamadazyma tenuis ATCC 10573]

    See identical proteins and their annotated locations for XP_006689410.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G3BCL6
    Conserved Domains (5) summary
    COG2319
    Location:31 → 546
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:317 → 620
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08625
    Location:641 → 773
    Utp13; Utp13 specific WD40 associated domain
    sd00039
    Location:368 → 405
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:60 → 392
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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