rgmd RGM domain family, member D [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rgmdprovided by ZNC
Official Full Name: RGM domain family, member Dprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-561
See related: Ensembl:ENSDARG00000034013 AllianceGenome:ZFIN:ZDB-GENE-030131-561
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb36g11; zgc:66326; wu:fb36g11
Summary: Predicted to enable coreceptor activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; central nervous system; musculature system; and pharyngeal arch. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 22

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (19630842..19646421)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (19615294..19621443)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc12e07.x1 (e-PCR)
- UniSTS:192581

fc12e07.x1 (e-PCR)
- UniSTS:192582

fb36g11.x1 (e-PCR)
- UniSTS:203150

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables coreceptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in BMP signaling pathway	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in side of membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RGM domain family; RGM domain family, member D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199573.1 → NP_955867.1 RGM domain family, member D precursor

See identical proteins and their annotated locations for NP_955867.1

Status: PROVISIONAL

Source sequence(s)

BC054682

UniProtKB/TrEMBL

Q7SYK8

Related

ENSDARP00000061724.4, ENSDART00000061725.5

Conserved Domains (2) summary

pfam06534
Location:213 → 385

RGM_C; Repulsive guidance molecule (RGM) C-terminus

pfam06535
Location:37 → 208

RGM_N; Repulsive guidance molecule (RGM) N-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007133.7 Reference GRCz11 Primary Assembly

Range

19630842..19646421

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021469302.1 → XP_021324977.1 RGM domain family isoform X1

UniProtKB/TrEMBL

A0A8M9P478

Conserved Domains (2) summary

pfam06534
Location:261 → 444

RGM_C; Repulsive guidance molecule (RGM) C-terminus

pfam06535
Location:85 → 256

RGM_N; Repulsive guidance molecule (RGM) N-terminus