Pcdha9 protocadherin alpha 9 [Rattus norvegicus (Norway rat)] - Gene

Summary

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Symbol: Pcdha9provided by RGD
Full Name: protocadherin alpha 9provided by RGD
Primary source: RGD:735153
See related: AllianceGenome:RGD:735153
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: rCNRv09
Summary: Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Orthologous to human PCDHA9 (protocadherin alpha 9). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: not in current annotation release
Expression: Biased expression in Brain (RPKM 145.7), Lung (RPKM 102.4) and 7 other tissues See more
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Genomic context

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See Pcdha9 in Genome Data Viewer

Location:: 18p11

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BF389688 (e-PCR)
- UniSTS:245509

PMC312645P1 (e-PCR)
- UniSTS:272906

RH91795 (e-PCR)
- UniSTS:85819

IB766 (e-PCR)
- UniSTS:42573

WI-19540 (e-PCR)
- UniSTS:63886

NoName (e-PCR)
- UniSTS:547524

Pcdha (e-PCR), detects polymorphism
- UniSTS:547524

RH65516 (e-PCR)
- UniSTS:66009

PMC311048P1 (e-PCR)
- UniSTS:272867

PMC311048P3 (e-PCR)
- UniSTS:272869

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protocadherin alpha-9

Names: cadherin-related neuronal receptor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199508.1 → NP_955802.1 protocadherin alpha-9 precursor

See identical proteins and their annotated locations for NP_955802.1

Status: PROVISIONAL

Source sequence(s)

AY573983

UniProtKB/TrEMBL

A6J351, F1LM35, Q767I3

Conserved Domains (3) summary

cd11304
Location:247 → 346

Cadherin_repeat; Cadherin tandem repeat domain

pfam15974
Location:795 → 938

Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

cl09101
Location:30 → 111

E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus